refactoredCPPNeuronMesher
NeuronGraph Member List

This is the complete list of members for NeuronGraph, including all inherited members.

addNode(const SWCNode &node)NeuronGraph
allCubicSplineResampledTrunks(std::map< int, std::map< int, SWCNode >> &trunks, double &delta) constNeuronGraph
allLinearSplineResampledTrunks(std::map< int, std::map< int, SWCNode >> &trunks, double &delta) constNeuronGraph
assembleTrunks(const std::map< int, std::map< int, SWCNode >> &trunkNodeSets) constNeuronGraph
assembleTrunks(const std::map< int, std::map< int, SWCNode >> &resampledTrunks, const std::map< int, int > &trunkParentMap)NeuronGraph
cubicSplineResampleTrunk(const std::map< int, SWCNode > &trunk, double &delta) constNeuronGraph
edgesNeuronGraphprivate
generateRefinements(const std::map< int, SWCNode > &nodeSet, double &delta, int &N, std::string &method)NeuronGraph
generateRefinements(double &delta, int &N, std::string &method)NeuronGraphinline
getNeighborMap(const std::map< int, SWCNode > &nodeSet) constNeuronGraphprivate
getNodes()NeuronGraphinline
getTrunkParentMap(const std::map< int, SWCNode > &nodeSet, const std::map< int, std::map< int, SWCNode >> &trunkNodeSets) constNeuronGraph
getTrunks(const std::map< int, SWCNode > &nodeSet, bool resetIndex=false) constNeuronGraph
getTrunks(bool resetIndex=false) constNeuronGraphinline
hasSomaSegment(const std::map< int, SWCNode > &nodeSet) constNeuronGraph
hasSomaSegment() constNeuronGraphinline
isSomaMissing(const std::map< int, SWCNode > &nodeSet) constNeuronGraph
isSomaMissing() constNeuronGraphinline
isTopologicallySorted(const std::map< int, SWCNode > &nodeSet) constNeuronGraph
isTopologicallySorted() constNeuronGraphinline
linearSplineResampleTrunk(const std::map< int, SWCNode > &trunk, double &delta) constNeuronGraph
NeuronGraph()NeuronGraphinline
NeuronGraph(std::string filename)NeuronGraphinline
NeuronGraph(const std::map< int, SWCNode > &nodeSet)NeuronGraph
nodesNeuronGraphprivate
numberOfEdges()NeuronGraphinline
numberOfNodes()NeuronGraphinline
preprocess(const std::map< int, SWCNode > &nodeSet) constNeuronGraph
readFromFile(const std::string &filename)NeuronGraph
readFromFileUGX(const std::string &filename)NeuronGraph
readFromFileUGXorSWC(const std::string &filename)NeuronGraph
removeSomaSegment(const std::map< int, SWCNode > &inputNodes) constNeuronGraph
removeSomaSegment() constNeuronGraphinline
setNodes(const std::map< int, SWCNode > &nodeSet)NeuronGraph
setSoma(const std::map< int, SWCNode > &nodeSet) constNeuronGraph
setSoma() constNeuronGraphinline
splitEdges(const std::map< int, SWCNode > &nodeSet) constNeuronGraph
splitEdges() constNeuronGraphinline
splitEdgesN(const std::map< int, SWCNode > &nodeSet, int N) constNeuronGraph
splitEdgesN(int N) constNeuronGraphinline
swc2ugx(const std::string &inputfile, const std::string &outputfile)NeuronGraph
topologicalSort(const std::map< int, SWCNode > &nodeSet) constNeuronGraph
topologicalSort() constNeuronGraphinline
ugx2swc(const std::string &inputfile, const std::string &outputfile)NeuronGraph
writeToFile(const std::map< int, SWCNode > &nodeSet, const std::string &filename)NeuronGraph
writeToFile(const std::string &filename)NeuronGraphinline
writeToFileUGX(const std::map< int, SWCNode > &nodeSet, const std::string &filename)NeuronGraph
writeToFileUGX(const std::string &filename)NeuronGraphinline