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refactoredCPPNeuronMesher
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This is the complete list of members for NeuronGraph, including all inherited members.
| addNode(const SWCNode &node) | NeuronGraph | |
| allCubicSplineResampledTrunks(std::map< int, std::map< int, SWCNode >> &trunks, double &delta) const | NeuronGraph | |
| allLinearSplineResampledTrunks(std::map< int, std::map< int, SWCNode >> &trunks, double &delta) const | NeuronGraph | |
| assembleTrunks(const std::map< int, std::map< int, SWCNode >> &trunkNodeSets) const | NeuronGraph | |
| assembleTrunks(const std::map< int, std::map< int, SWCNode >> &resampledTrunks, const std::map< int, int > &trunkParentMap) | NeuronGraph | |
| cubicSplineResampleTrunk(const std::map< int, SWCNode > &trunk, double &delta) const | NeuronGraph | |
| edges | NeuronGraph | private |
| generateRefinements(const std::map< int, SWCNode > &nodeSet, double &delta, int &N, std::string &method) | NeuronGraph | |
| generateRefinements(double &delta, int &N, std::string &method) | NeuronGraph | inline |
| getNeighborMap(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | private |
| getNodes() | NeuronGraph | inline |
| getTrunkParentMap(const std::map< int, SWCNode > &nodeSet, const std::map< int, std::map< int, SWCNode >> &trunkNodeSets) const | NeuronGraph | |
| getTrunks(const std::map< int, SWCNode > &nodeSet, bool resetIndex=false) const | NeuronGraph | |
| getTrunks(bool resetIndex=false) const | NeuronGraph | inline |
| hasSomaSegment(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
| hasSomaSegment() const | NeuronGraph | inline |
| isSomaMissing(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
| isSomaMissing() const | NeuronGraph | inline |
| isTopologicallySorted(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
| isTopologicallySorted() const | NeuronGraph | inline |
| linearSplineResampleTrunk(const std::map< int, SWCNode > &trunk, double &delta) const | NeuronGraph | |
| NeuronGraph() | NeuronGraph | inline |
| NeuronGraph(std::string filename) | NeuronGraph | inline |
| NeuronGraph(const std::map< int, SWCNode > &nodeSet) | NeuronGraph | |
| nodes | NeuronGraph | private |
| numberOfEdges() | NeuronGraph | inline |
| numberOfNodes() | NeuronGraph | inline |
| preprocess(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
| readFromFile(const std::string &filename) | NeuronGraph | |
| readFromFileUGX(const std::string &filename) | NeuronGraph | |
| readFromFileUGXorSWC(const std::string &filename) | NeuronGraph | |
| removeSomaSegment(const std::map< int, SWCNode > &inputNodes) const | NeuronGraph | |
| removeSomaSegment() const | NeuronGraph | inline |
| setNodes(const std::map< int, SWCNode > &nodeSet) | NeuronGraph | |
| setSoma(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
| setSoma() const | NeuronGraph | inline |
| splitEdges(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
| splitEdges() const | NeuronGraph | inline |
| splitEdgesN(const std::map< int, SWCNode > &nodeSet, int N) const | NeuronGraph | |
| splitEdgesN(int N) const | NeuronGraph | inline |
| swc2ugx(const std::string &inputfile, const std::string &outputfile) | NeuronGraph | |
| topologicalSort(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
| topologicalSort() const | NeuronGraph | inline |
| ugx2swc(const std::string &inputfile, const std::string &outputfile) | NeuronGraph | |
| writeToFile(const std::map< int, SWCNode > &nodeSet, const std::string &filename) | NeuronGraph | |
| writeToFile(const std::string &filename) | NeuronGraph | inline |
| writeToFileUGX(const std::map< int, SWCNode > &nodeSet, const std::string &filename) | NeuronGraph | |
| writeToFileUGX(const std::string &filename) | NeuronGraph | inline |