refactoredCPPNeuronMesher
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This is the complete list of members for NeuronGraph, including all inherited members.
addNode(const SWCNode &node) | NeuronGraph | |
allCubicSplineResampledTrunks(std::map< int, std::map< int, SWCNode >> &trunks, double &delta) const | NeuronGraph | |
allLinearSplineResampledTrunks(std::map< int, std::map< int, SWCNode >> &trunks, double &delta) const | NeuronGraph | |
assembleTrunks(const std::map< int, std::map< int, SWCNode >> &trunkNodeSets) const | NeuronGraph | |
assembleTrunks(const std::map< int, std::map< int, SWCNode >> &resampledTrunks, const std::map< int, int > &trunkParentMap) | NeuronGraph | |
cubicSplineResampleTrunk(const std::map< int, SWCNode > &trunk, double &delta) const | NeuronGraph | |
edges | NeuronGraph | private |
generateRefinements(const std::map< int, SWCNode > &nodeSet, double &delta, int &N, std::string &method) | NeuronGraph | |
generateRefinements(double &delta, int &N, std::string &method) | NeuronGraph | inline |
getNeighborMap(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | private |
getNodes() | NeuronGraph | inline |
getTrunkParentMap(const std::map< int, SWCNode > &nodeSet, const std::map< int, std::map< int, SWCNode >> &trunkNodeSets) const | NeuronGraph | |
getTrunks(const std::map< int, SWCNode > &nodeSet, bool resetIndex=false) const | NeuronGraph | |
getTrunks(bool resetIndex=false) const | NeuronGraph | inline |
hasSomaSegment(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
hasSomaSegment() const | NeuronGraph | inline |
isSomaMissing(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
isSomaMissing() const | NeuronGraph | inline |
isTopologicallySorted(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
isTopologicallySorted() const | NeuronGraph | inline |
linearSplineResampleTrunk(const std::map< int, SWCNode > &trunk, double &delta) const | NeuronGraph | |
NeuronGraph() | NeuronGraph | inline |
NeuronGraph(std::string filename) | NeuronGraph | inline |
NeuronGraph(const std::map< int, SWCNode > &nodeSet) | NeuronGraph | |
nodes | NeuronGraph | private |
numberOfEdges() | NeuronGraph | inline |
numberOfNodes() | NeuronGraph | inline |
preprocess(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
readFromFile(const std::string &filename) | NeuronGraph | |
readFromFileUGX(const std::string &filename) | NeuronGraph | |
readFromFileUGXorSWC(const std::string &filename) | NeuronGraph | |
removeSomaSegment(const std::map< int, SWCNode > &inputNodes) const | NeuronGraph | |
removeSomaSegment() const | NeuronGraph | inline |
setNodes(const std::map< int, SWCNode > &nodeSet) | NeuronGraph | |
setSoma(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
setSoma() const | NeuronGraph | inline |
splitEdges(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
splitEdges() const | NeuronGraph | inline |
splitEdgesN(const std::map< int, SWCNode > &nodeSet, int N) const | NeuronGraph | |
splitEdgesN(int N) const | NeuronGraph | inline |
swc2ugx(const std::string &inputfile, const std::string &outputfile) | NeuronGraph | |
topologicalSort(const std::map< int, SWCNode > &nodeSet) const | NeuronGraph | |
topologicalSort() const | NeuronGraph | inline |
ugx2swc(const std::string &inputfile, const std::string &outputfile) | NeuronGraph | |
writeToFile(const std::map< int, SWCNode > &nodeSet, const std::string &filename) | NeuronGraph | |
writeToFile(const std::string &filename) | NeuronGraph | inline |
writeToFileUGX(const std::map< int, SWCNode > &nodeSet, const std::string &filename) | NeuronGraph | |
writeToFileUGX(const std::string &filename) | NeuronGraph | inline |